Genomic epidemiology of novel coronavirus

Nextstrain is an open-source project to harness the scientific and public health potential of pathogen genome data. We provide a continually-updated view of publicly available data alongside powerful analytic and visualization tools for use by the community. Our goal is to aid epidemiological understanding and improve outbreak response. If you have any questions, or simply want to say hi, please give us a shout at hello@nextstrain.org.

The ARTIC network

The ARTIC network is making available a set of materials to assist groups in sequencing the virus including a set of primers, laboratory protocols, bioinformatics tutorials and datasets. These are mainly focused around the use of the portable Oxford Nanopore MinION sequencer, although aspects of the protocol such as the primer scheme and sample amplification may be generalised to other sequencing platforms.

Nextstrain: analysis and visualization of pathogen sequence data

O Nextstrain é um projeto open-source destinado ao monitoramento de patógenos por meio de dados genômicos. Sua plataforma possui um banco de dados de genomas virais, um pipeline de bioinformática para análise filodinâmica e uma ferramenta para visualização interativa.

Veja o texto completo aqui no site Nextstrain - Mapa da dispersão das cepas de sars-cov2